Installation

Under construction

The package is under construction, therefore the pip and container installations might be lagging behind. Clone the main branch from the repository to use the most up to date stable version corresponding to the documentation.

You can either install from pypi with the command

python -m  pip install inmotifin

or pull the container at dockerhub. If you have docker installed, you can run from within the docker container with

sudo docker run -it cbgr/inmotifin:3.0.3 bash

When using the pip install, you may want to create a conda environment for it. The commands below will do that for you:

conda create --name inmotifin python=3.10
conda activate inmotifin
python -m  pip install inmotifin

Altenarively, you can also clone the inMOTIFin bitbucket repository and install the package locally by pip install -e . run in the folder where the setup.py file resides.

Dependencies

The code is written in python 3.9 . The following dependencies are installed with the software

• click

• numpy

• pandas

• DagSim

• pyjaspar

• biopython

• hmmlearn