.. inMOTIFin documentation master file, created by
   sphinx-quickstart on Tue Jan 28 09:31:17 2025.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

inMOTIFin: a lightweight end-to-end simulation software for regulatory sequences
=================================================================================

The inMOTIFin package is described in the manuscript: `inMOTIFin: a lightweight end-to-end simulation software for regulatory sequences <https://arxiv.org/abs/2506.20769>`_.
The source code is available at the `Bitbucket repository <https://bitbucket.org/CBGR/inmotifin/src/main/>`_.

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   usage/introduction
   usage/quickstart
   usage/installation
   usage/command_line_options
   usage/python_module_usage
   usage/explanations
   misc/contact
   misc/changelog