inMOTIFin: a lightweight end-to-end simulation software for regulatory sequences

The inMOTIFin package is described in the manuscript: inMOTIFin: a lightweight end-to-end simulation software for regulatory sequences. The source code is available at the Bitbucket repository.

Contents:

• Introduction
  • Simulation of sequences with inserted motif instances
  • Simulation of random sequences
  • Simulation of motifs
  • Multimerisation of motifs
  • Manuscript and related resources
• Quickstart
  • Installation
  • Command line usage
  • Further information
• Installation
  • Dependencies
• Command line options
  • Simulation of sequences with inserted motif instances
  • Simulation of random sequences
  • Simulation of motifs
  • Multimerisation of motifs
• Python module
  • Controller class
  • Additional classes
  • Examples
  • Detailed documentation of classes
• Explanations
  • Motif simulation explained
  • Explanation of motif groups
• Contact
• Changelog